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Merge pull request #122396 from jbedo/octopus 

octopus: 0.7.3 -> 0.7.4
This commit is contained in:
Sandro 2021-05-11 01:19:54 +02:00 committed by GitHub
parent b6a4927851 40eeb2c6d3
commit 0a3c566d56
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GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 15 deletions
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18
pkgs/applications/science/biology/octopus/default.nix
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@ -1,28 +1,16 @@
{lib, stdenv, fetchpatch, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}: {lib, stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "octopus"; pname = "octopus";
version = "0.7.3"; version = "0.7.4";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "luntergroup"; owner = "luntergroup";
repo = "octopus"; repo = "octopus";
rev = "v${version}"; rev = "v${version}";
sha256 = "sha256-sPOBZ0YrEdjMNVye/xwqwA5IpsLy2jWN3sm/ce1fLg4="; sha256 = "sha256-FAogksVxUlzMlC0BqRu22Vchj6VX+8yNlHRLyb3g1sE=";
}; };
patches = [
# Backport TZ patchs (https://github.com/luntergroup/octopus/issues/149)
(fetchpatch {
url = "https://github.com/luntergroup/octopus/commit/3dbd8cc33616129ad356e99a4dae82e4f6702250.patch";
sha256 = "sha256-UCufVU9x+L1zCEhkr/48KFYRvh8w26w8Jr+O+wULKK8=";
})
(fetchpatch {
url = "https://github.com/luntergroup/octopus/commit/af5a66a2792bd098fb53eb79fb4822625f09305e.patch";
sha256 = "sha256-r8jv6EZHfTWVLYUBau3F+ilOd9IeH8rmatorEY5LXP4=";
})
];
nativeBuildInputs = [ cmake pkg-config ]; nativeBuildInputs = [ cmake pkg-config ];
buildInputs = [ boost gmp htslib zlib xz ]; buildInputs = [ boost gmp htslib zlib xz ];