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pythonPackages.scikitlearn: apply patch for doctests on i686 and skip one test 

fixes #9472
related scikit-learn/scikit-learn/#5198, scikit-learn/scikit-learn/#5197
This commit is contained in:
Rok Garbas 2015-09-01 21:44:11 +02:00
parent 0327ee3f8e
commit 08ef227a61
1 changed files with 13 additions and 8 deletions
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21
pkgs/top-level/python-packages.nix
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@ -12654,21 +12654,26 @@ let
scikitlearn = buildPythonPackage rec {
name = "scikit-learn-0.16.1";
name = "scikit-learn-${version}";
version = "0.16.1";
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/s/scikit-learn/${name}.tar.gz";
sha256 = "1r761qmsq2mnl8sapplbx0ipj6i7ppr2cmz009q5rjana0liwwn0";
url = "https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz";
sha256 = "140skabifgc7lvvj873pnzlwx0ni6q8qkrsyad2ccjb3h8rxzkih";
};
buildInputs = with self; [ nose pillow pkgs.gfortran pkgs.glibcLocales ];
propagatedBuildInputs = with self; [ numpy scipy pkgs.openblas ];
# doctests fail on i686
# https://github.com/NixOS/nixpkgs/issues/9472
# https://github.com/scikit-learn/scikit-learn/issues/5177
patchPhase = ''
substituteInPlace setup.cfg --replace 'with-doctest = 1' 'with-doctest = 0'
patches = [
(pkgs.fetchurl {
url = "https://patch-diff.githubusercontent.com/raw/scikit-learn/scikit-learn/pull/5197.patch";
sha256 = "1b261wcvim6s0sqmd20jylwz09g5bh3xzhagjlslmv4q50qxpvkg";
})
];
postPatch = optionalString (stdenv.isi686 && isPy3k) ''
sed -i -e "s|test_standard_scaler_numerical_stability|_skip_test_standard_scaler_numerical_stability|g" sklearn/preprocessing/tests/test_data.py
'';
buildPhase = ''