work on fixing up bioconductor packages
This commit is contained in:
Jeffrey David Johnson
parent
1911d4925e
commit
05fc143451
@ -698,6 +698,337 @@ let
|
|||||||
|
|
||||||
# Packages which cannot be installed due to lack of dependencies or other reasons.
|
# Packages which cannot be installed due to lack of dependencies or other reasons.
|
||||||
brokenPackages = [
|
brokenPackages = [
|
||||||
|
"RareVariantVis" # broken build
|
||||||
|
"ptw" # depends on broken package nloptr
|
||||||
|
"INSPEcT" # broken build
|
||||||
|
"gpuR" # broken build
|
||||||
|
"erma" # broken build
|
||||||
|
"CNVPanelizer" # broken build
|
||||||
|
"MBmca" # depends on broken package chipPCR
|
||||||
|
"dpcR" # depends on broken package chipPCR
|
||||||
|
"chipPCR" # broken build
|
||||||
|
"alsace" # broken build
|
||||||
|
"rrlda" # depends on broken package VIM
|
||||||
|
"qrfactor" # depends on broken package VIM
|
||||||
|
"MVN" # depends on broken package VIM
|
||||||
|
"mvoutlier" # depends on broken package VIM
|
||||||
|
"robCompositions" # depends on broken package VIM
|
||||||
|
"DiagrammeRsvg" # depends on broken package V8
|
||||||
|
"dagitty" # depends on broken package V8
|
||||||
|
"remoter" # depends on broken package sodium
|
||||||
|
"Fletcher2013b" # depends on broken package RTN
|
||||||
|
"apaStyle" # depends on broken package ReporteRs
|
||||||
|
"categoryCompare" # depends on broken package RCytoscape
|
||||||
|
"preseqR" # depends on broken package polynom
|
||||||
|
"permutations" # depends on broken package partitions
|
||||||
|
"yummlyr" # depends on broken package openssl
|
||||||
|
"yhatr" # depends on broken package openssl
|
||||||
|
"WufooR" # depends on broken package openssl
|
||||||
|
"WikiSocio" # depends on broken package openssl
|
||||||
|
"WikipediR" # depends on broken package openssl
|
||||||
|
"WikipediaR" # depends on broken package openssl
|
||||||
|
"WikidataR" # depends on broken package openssl
|
||||||
|
"whoapi" # depends on broken package openssl
|
||||||
|
"whoami" # depends on broken package openssl
|
||||||
|
"WHO" # depends on broken package openssl
|
||||||
|
"WaterML" # depends on broken package openssl
|
||||||
|
"vegdata" # depends on broken package openssl
|
||||||
|
"twitteR" # depends on broken package openssl
|
||||||
|
"tumblR" # depends on broken package openssl
|
||||||
|
"tuber" # depends on broken package openssl
|
||||||
|
"translateR" # depends on broken package openssl
|
||||||
|
"transcribeR" # depends on broken package openssl
|
||||||
|
"TMDb" # depends on broken package openssl
|
||||||
|
"tigris" # depends on broken package openssl
|
||||||
|
"threewords" # depends on broken package openssl
|
||||||
|
"SWMPr" # depends on broken package openssl
|
||||||
|
"swirlify" # depends on broken package openssl
|
||||||
|
"swirl" # depends on broken package openssl
|
||||||
|
"stplanr" # depends on broken package openssl
|
||||||
|
"stmBrowser" # depends on broken package openssl
|
||||||
|
"spareserver" # depends on broken package openssl
|
||||||
|
"solrium" # depends on broken package openssl
|
||||||
|
"solr" # depends on broken package openssl
|
||||||
|
"SocialMediaMineR" # depends on broken package openssl
|
||||||
|
"PogromcyDanych" # depends on broken package openssl
|
||||||
|
"SmarterPoland" # depends on broken package openssl
|
||||||
|
"slackr" # depends on broken package openssl
|
||||||
|
"sbgr" # depends on broken package openssl
|
||||||
|
"RYandexTranslate" # depends on broken package openssl
|
||||||
|
"rwunderground" # depends on broken package openssl
|
||||||
|
"rWBclimate" # depends on broken package openssl
|
||||||
|
"wikipediatrend" # depends on broken package openssl
|
||||||
|
"webchem" # depends on broken package openssl
|
||||||
|
"sejmRP" # depends on broken package openssl
|
||||||
|
"scholar" # depends on broken package openssl
|
||||||
|
"RTCGA_rnaseq" # depends on broken package openssl
|
||||||
|
"RTCGA_mutations" # depends on broken package openssl
|
||||||
|
"RTCGA_clinical" # depends on broken package openssl
|
||||||
|
"RTCGA" # depends on broken package openssl
|
||||||
|
"rNOMADS" # depends on broken package openssl
|
||||||
|
"nhanesA" # depends on broken package openssl
|
||||||
|
"MazamaSpatialUtils" # depends on broken package openssl
|
||||||
|
"gsheet" # depends on broken package openssl
|
||||||
|
"rvest" # depends on broken package openssl
|
||||||
|
"rvertnet" # depends on broken package openssl
|
||||||
|
"rusda" # depends on broken package openssl
|
||||||
|
"rtimes" # depends on broken package openssl
|
||||||
|
"rsunlight" # depends on broken package openssl
|
||||||
|
"rstatscn" # depends on broken package openssl
|
||||||
|
"RSocrata" # depends on broken package openssl
|
||||||
|
"rsnps" # depends on broken package openssl
|
||||||
|
"RSiteCatalyst" # depends on broken package openssl
|
||||||
|
"rscopus" # depends on broken package openssl
|
||||||
|
"rredlist" # depends on broken package openssl
|
||||||
|
"RPublica" # depends on broken package openssl
|
||||||
|
"RPresto" # depends on broken package openssl
|
||||||
|
"rplos" # depends on broken package openssl
|
||||||
|
"rotl" # depends on broken package openssl
|
||||||
|
"rorcid" # depends on broken package openssl
|
||||||
|
"ROptimizely" # depends on broken package openssl
|
||||||
|
"ROpenWeatherMap" # depends on broken package openssl
|
||||||
|
"robotstxt" # depends on broken package openssl
|
||||||
|
"rnoaa" # depends on broken package openssl
|
||||||
|
"RNeo4j" # depends on broken package openssl
|
||||||
|
"rnbn" # depends on broken package openssl
|
||||||
|
"Rmonkey" # depends on broken package openssl
|
||||||
|
"Rlinkedin" # depends on broken package openssl
|
||||||
|
"rinat" # depends on broken package openssl
|
||||||
|
"ridigbio" # depends on broken package openssl
|
||||||
|
"rHealthDataGov" # depends on broken package openssl
|
||||||
|
"RGoogleAnalyticsPremium" # depends on broken package openssl
|
||||||
|
"RGoogleAnalytics" # depends on broken package openssl
|
||||||
|
"heemod" # depends on broken package openssl
|
||||||
|
"rgho" # depends on broken package openssl
|
||||||
|
"rgeolocate" # depends on broken package openssl
|
||||||
|
"RGA" # depends on broken package openssl
|
||||||
|
"RForcecom" # depends on broken package openssl
|
||||||
|
"rfoaas" # depends on broken package openssl
|
||||||
|
"rfml" # depends on broken package openssl
|
||||||
|
"rfisheries" # depends on broken package openssl
|
||||||
|
"rfishbase" # depends on broken package openssl
|
||||||
|
"zoon" # depends on broken package openssl
|
||||||
|
"rfigshare" # depends on broken package openssl
|
||||||
|
"Rfacebook" # depends on broken package openssl
|
||||||
|
"rerddap" # depends on broken package openssl
|
||||||
|
"request" # depends on broken package openssl
|
||||||
|
"repmis" # depends on broken package openssl
|
||||||
|
"rentrez" # depends on broken package openssl
|
||||||
|
"REDCapR" # depends on broken package openssl
|
||||||
|
"redcapAPI" # depends on broken package openssl
|
||||||
|
"rechonest" # depends on broken package openssl
|
||||||
|
"rebird" # depends on broken package openssl
|
||||||
|
"rdrop2" # depends on broken package openssl
|
||||||
|
"rdian" # depends on broken package openssl
|
||||||
|
"RCy3" # depends on broken package openssl
|
||||||
|
"rcrossref" # depends on broken package openssl
|
||||||
|
"RCriteo" # depends on broken package openssl
|
||||||
|
"Rcolombos" # depends on broken package openssl
|
||||||
|
"rclinicaltrials" # depends on broken package openssl
|
||||||
|
"rbison" # depends on broken package openssl
|
||||||
|
"rbhl" # depends on broken package openssl
|
||||||
|
"randNames" # depends on broken package openssl
|
||||||
|
"quickmapr" # depends on broken package openssl
|
||||||
|
"qrmtools" # depends on broken package openssl
|
||||||
|
"Quandl" # depends on broken package openssl
|
||||||
|
"pxweb" # depends on broken package openssl
|
||||||
|
"pvsR" # depends on broken package openssl
|
||||||
|
"pushoverr" # depends on broken package openssl
|
||||||
|
"PSICQUIC" # depends on broken package openssl
|
||||||
|
"prism" # depends on broken package openssl
|
||||||
|
"primerTree" # depends on broken package openssl
|
||||||
|
"pollstR" # depends on broken package openssl
|
||||||
|
"plotly" # depends on broken package openssl
|
||||||
|
"pinnacle_API" # depends on broken package openssl
|
||||||
|
"pdftables" # depends on broken package openssl
|
||||||
|
"pdfetch" # depends on broken package openssl
|
||||||
|
"paxtoolsr" # depends on broken package openssl
|
||||||
|
"pageviews" # depends on broken package openssl
|
||||||
|
"packagetrackr" # depends on broken package openssl
|
||||||
|
"ores" # depends on broken package openssl
|
||||||
|
"OECD" # depends on broken package openssl
|
||||||
|
"rdryad" # depends on broken package openssl
|
||||||
|
"rdatacite" # depends on broken package openssl
|
||||||
|
"pangaear" # depends on broken package openssl
|
||||||
|
"oai" # depends on broken package openssl
|
||||||
|
"neotoma" # depends on broken package openssl
|
||||||
|
"myvariant" # depends on broken package openssl
|
||||||
|
"mygene" # depends on broken package openssl
|
||||||
|
"EMbC" # depends on broken package openssl
|
||||||
|
"move" # depends on broken package openssl
|
||||||
|
"miRLAB" # depends on broken package openssl
|
||||||
|
"AzureML" # depends on broken package openssl
|
||||||
|
"miniCRAN" # depends on broken package openssl
|
||||||
|
"markmyassignment" # depends on broken package openssl
|
||||||
|
"manifestoR" # depends on broken package openssl
|
||||||
|
"TLdating" # depends on broken package openssl
|
||||||
|
"RLumShiny" # depends on broken package openssl
|
||||||
|
"Luminescence" # depends on broken package openssl
|
||||||
|
"lumendb" # depends on broken package openssl
|
||||||
|
"lucr" # depends on broken package openssl
|
||||||
|
"longurl" # depends on broken package openssl
|
||||||
|
"lintr" # depends on broken package openssl
|
||||||
|
"LightningR" # depends on broken package openssl
|
||||||
|
"interAdapt" # depends on broken package openssl
|
||||||
|
"knitcitations" # depends on broken package openssl
|
||||||
|
"ROntoTools" # depends on broken package openssl
|
||||||
|
"RnaSeqSampleSize" # depends on broken package openssl
|
||||||
|
"CompGO" # depends on broken package openssl
|
||||||
|
"pathview" # depends on broken package openssl
|
||||||
|
"PAPi" # depends on broken package openssl
|
||||||
|
"mmnet" # depends on broken package openssl
|
||||||
|
"KEGGprofile" # depends on broken package openssl
|
||||||
|
"Hiiragi2013" # depends on broken package openssl
|
||||||
|
"gage" # depends on broken package openssl
|
||||||
|
"clusterProfiler" # depends on broken package openssl
|
||||||
|
"KEGGREST" # depends on broken package openssl
|
||||||
|
"internetarchive" # depends on broken package openssl
|
||||||
|
"SocialMediaLab" # depends on broken package openssl
|
||||||
|
"instaR" # depends on broken package openssl
|
||||||
|
"imguR" # depends on broken package openssl
|
||||||
|
"idbr" # depends on broken package openssl
|
||||||
|
"httping" # depends on broken package openssl
|
||||||
|
"httpcache" # depends on broken package openssl
|
||||||
|
"htmltab" # depends on broken package openssl
|
||||||
|
"hoardeR" # depends on broken package openssl
|
||||||
|
"googlesheets" # depends on broken package openssl
|
||||||
|
"GoogleGenomics" # depends on broken package openssl
|
||||||
|
"googleformr" # depends on broken package openssl
|
||||||
|
"searchConsoleR" # depends on broken package openssl
|
||||||
|
"googleAuthR" # depends on broken package openssl
|
||||||
|
"gmailr" # depends on broken package openssl
|
||||||
|
"gitlabr" # depends on broken package openssl
|
||||||
|
"switchrGist" # depends on broken package openssl
|
||||||
|
"spoccutils" # depends on broken package openssl
|
||||||
|
"rbokeh" # depends on broken package openssl
|
||||||
|
"mapr" # depends on broken package openssl
|
||||||
|
"gistr" # depends on broken package openssl
|
||||||
|
"geoknife" # depends on broken package openssl
|
||||||
|
"geocodeHERE" # depends on broken package openssl
|
||||||
|
"genderizeR" # depends on broken package openssl
|
||||||
|
"NLPutils" # depends on broken package openssl
|
||||||
|
"qdap" # depends on broken package openssl
|
||||||
|
"gender" # depends on broken package openssl
|
||||||
|
"GAR" # depends on broken package openssl
|
||||||
|
"flora" # depends on broken package openssl
|
||||||
|
"fitbitScraper" # depends on broken package openssl
|
||||||
|
"federalregister" # depends on broken package openssl
|
||||||
|
"eurostat" # depends on broken package openssl
|
||||||
|
"enigma" # depends on broken package openssl
|
||||||
|
"elastic" # depends on broken package openssl
|
||||||
|
"ecoengine" # depends on broken package openssl
|
||||||
|
"ecb" # depends on broken package openssl
|
||||||
|
"dpmr" # depends on broken package openssl
|
||||||
|
"distcomp" # depends on broken package openssl
|
||||||
|
"diezeit" # depends on broken package openssl
|
||||||
|
"wru" # depends on broken package openssl
|
||||||
|
"TCGAbiolinks" # depends on broken package openssl
|
||||||
|
"regionReport" # depends on broken package openssl
|
||||||
|
"rbundler" # depends on broken package openssl
|
||||||
|
"pacman" # depends on broken package openssl
|
||||||
|
"x_ent" # depends on broken package openssl
|
||||||
|
"opencpu" # depends on broken package openssl
|
||||||
|
"inpdfr" # depends on broken package openssl
|
||||||
|
"metacom" # depends on broken package openssl
|
||||||
|
"FedData" # depends on broken package openssl
|
||||||
|
"easypackages" # depends on broken package openssl
|
||||||
|
"demi" # depends on broken package openssl
|
||||||
|
"creditr" # depends on broken package openssl
|
||||||
|
"cogena" # depends on broken package openssl
|
||||||
|
"bisectr" # depends on broken package openssl
|
||||||
|
"devtools" # depends on broken package openssl
|
||||||
|
"ddeploy" # depends on broken package openssl
|
||||||
|
"EGRETci" # depends on broken package openssl
|
||||||
|
"EGRET" # depends on broken package openssl
|
||||||
|
"dataRetrieval" # depends on broken package openssl
|
||||||
|
"dataonderivatives" # depends on broken package openssl
|
||||||
|
"crunch" # depends on broken package openssl
|
||||||
|
"cranlogs" # depends on broken package openssl
|
||||||
|
"covr" # depends on broken package openssl
|
||||||
|
"couchDB" # depends on broken package openssl
|
||||||
|
"ckanr" # depends on broken package openssl
|
||||||
|
"chromer" # depends on broken package openssl
|
||||||
|
"chillR" # depends on broken package openssl
|
||||||
|
"censusr" # depends on broken package openssl
|
||||||
|
"cdcfluview" # depends on broken package openssl
|
||||||
|
"boxr" # depends on broken package openssl
|
||||||
|
"traits" # depends on broken package openssl
|
||||||
|
"TR8" # depends on broken package openssl
|
||||||
|
"SigTree" # depends on broken package openssl
|
||||||
|
"phyext2" # depends on broken package openssl
|
||||||
|
"PCPS" # depends on broken package openssl
|
||||||
|
"BMhyd" # depends on broken package openssl
|
||||||
|
"BioGeoBEARS" # depends on broken package openssl
|
||||||
|
"treescape" # depends on broken package openssl
|
||||||
|
"phylosignal" # depends on broken package openssl
|
||||||
|
"adephylo" # depends on broken package openssl
|
||||||
|
"phylobase" # depends on broken package openssl
|
||||||
|
"RNeXML" # depends on broken package openssl
|
||||||
|
"myTAI" # depends on broken package openssl
|
||||||
|
"MonoPhy" # depends on broken package openssl
|
||||||
|
"brranching" # depends on broken package openssl
|
||||||
|
"bdvis" # depends on broken package openssl
|
||||||
|
"taxize" # depends on broken package openssl
|
||||||
|
"bold" # depends on broken package openssl
|
||||||
|
"biomartr" # depends on broken package openssl
|
||||||
|
"BiocCheck" # depends on broken package openssl
|
||||||
|
"bigrquery" # depends on broken package openssl
|
||||||
|
"benchmarkme" # depends on broken package openssl
|
||||||
|
"atsd" # depends on broken package openssl
|
||||||
|
"fulltext" # depends on broken package openssl
|
||||||
|
"aRxiv" # depends on broken package openssl
|
||||||
|
"SpaDES" # depends on broken package openssl
|
||||||
|
"archivist_github" # depends on broken package openssl
|
||||||
|
"archivist" # depends on broken package openssl
|
||||||
|
"AntWeb" # depends on broken package openssl
|
||||||
|
"RefNet" # depends on broken package openssl
|
||||||
|
"pwOmics" # depends on broken package openssl
|
||||||
|
"grasp2db" # depends on broken package openssl
|
||||||
|
"EnsDb_Rnorvegicus_v79" # depends on broken package openssl
|
||||||
|
"EnsDb_Rnorvegicus_v75" # depends on broken package openssl
|
||||||
|
"EnsDb_Mmusculus_v79" # depends on broken package openssl
|
||||||
|
"EnsDb_Mmusculus_v75" # depends on broken package openssl
|
||||||
|
"EnsDb_Hsapiens_v79" # depends on broken package openssl
|
||||||
|
"EnsDb_Hsapiens_v75" # depends on broken package openssl
|
||||||
|
"REDseq" # depends on broken package openssl
|
||||||
|
"GUIDEseq" # depends on broken package openssl
|
||||||
|
"ggtut" # depends on broken package openssl
|
||||||
|
"FunciSNP" # depends on broken package openssl
|
||||||
|
"ChIPpeakAnno" # depends on broken package openssl
|
||||||
|
"ensembldb" # depends on broken package openssl
|
||||||
|
"ProteomicsAnnotationHubData" # depends on broken package openssl
|
||||||
|
"AnnotationHubData" # depends on broken package openssl
|
||||||
|
"AnnotationHub" # depends on broken package openssl
|
||||||
|
"analogsea" # depends on broken package openssl
|
||||||
|
"alm" # depends on broken package openssl
|
||||||
|
"abbyyR" # depends on broken package openssl
|
||||||
|
"httr" # depends on broken package openssl
|
||||||
|
"bcrypt" # depends on broken package openssl
|
||||||
|
"GLMMRR" # depends on broken package lme4
|
||||||
|
"replicationInterval" # depends on broken package lme4
|
||||||
|
"GWASdata" # depends on broken package GWASTools
|
||||||
|
"vtpnet" # depends on broken package gQTLBase
|
||||||
|
"geuvStore" # depends on broken package gQTLBase
|
||||||
|
"LLSR" # depends on broken package ggtern
|
||||||
|
"ggtern" # broken build
|
||||||
|
"EnsemblePCReg" # depends on broken package EnsembleBase
|
||||||
|
"EnsembleCV" # depends on broken package EnsembleBase
|
||||||
|
"popprxl" # depends on broken package poppr
|
||||||
|
"cpgen" # depends on broken package pedigreemm
|
||||||
|
"mitml" # depends on broken package jomo
|
||||||
|
"gwascat" # depends on broken package gQTLBase
|
||||||
|
"gQTLstats" # depends on broken package gQTLBase
|
||||||
|
"gQTLBase" # broken build
|
||||||
|
"IlluminaHumanMethylation450k_db" # broken build
|
||||||
|
"gahgu95ecdf" # broken build
|
||||||
|
"gahgu95dcdf" # broken build
|
||||||
|
"gahgu95ccdf" # broken build
|
||||||
|
"gahgu95bcdf" # broken build
|
||||||
|
"gahgu95av2cdf" # broken build
|
||||||
|
"PREDAsampledata" # depends on broken package gahgu133plus2cdf
|
||||||
|
"gahgu133plus2cdf" # broken build
|
||||||
|
"gahgu133bcdf" # broken build
|
||||||
|
"gahgu133acdf" # broken build
|
||||||
"annmap" # depends on broken package RMySQL
|
"annmap" # depends on broken package RMySQL
|
||||||
"choroplethr" # depends on broken package acs
|
"choroplethr" # depends on broken package acs
|
||||||
"acs" # broken build
|
"acs" # broken build
|
||||||
@ -956,7 +1287,6 @@ let
|
|||||||
"genridge" # depends on broken package nlopt
|
"genridge" # depends on broken package nlopt
|
||||||
"geojsonio" # depends on broken package V8
|
"geojsonio" # depends on broken package V8
|
||||||
"GEWIST" # depends on broken package nlopt
|
"GEWIST" # depends on broken package nlopt
|
||||||
"ggtern" # build is broken
|
|
||||||
"ggtree" # broken build
|
"ggtree" # broken build
|
||||||
"gimme" # depends on broken package nlopt
|
"gimme" # depends on broken package nlopt
|
||||||
"gmatrix" # depends on broken package cudatoolkit
|
"gmatrix" # depends on broken package cudatoolkit
|
||||||
@ -971,7 +1301,6 @@ let
|
|||||||
"gplm" # depends on broken package nlopt
|
"gplm" # depends on broken package nlopt
|
||||||
"gpuR" # depends on GPU-specific header files
|
"gpuR" # depends on GPU-specific header files
|
||||||
"gputools" # depends on broken package cudatoolkit
|
"gputools" # depends on broken package cudatoolkit
|
||||||
"gQTLBase" # depends on broken package GenomicFiles
|
|
||||||
"granova" # depends on broken package nlopt
|
"granova" # depends on broken package nlopt
|
||||||
"graphicalVAR" # depends on broken package nlopt
|
"graphicalVAR" # depends on broken package nlopt
|
||||||
"GraphPAC" # broken build
|
"GraphPAC" # broken build
|
||||||
@ -1151,7 +1480,6 @@ let
|
|||||||
"parma" # depends on broken package nlopt
|
"parma" # depends on broken package nlopt
|
||||||
"partitions" # broken build
|
"partitions" # broken build
|
||||||
"pathRender" # build is broken
|
"pathRender" # build is broken
|
||||||
"pathview" # build is broken
|
|
||||||
"PatternClass" # build is broken
|
"PatternClass" # build is broken
|
||||||
"PBImisc" # depends on broken package nlopt
|
"PBImisc" # depends on broken package nlopt
|
||||||
"PBSddesolve" # build is broken
|
"PBSddesolve" # build is broken
|
||||||
|
|||||||
Loading…
x
Reference in New Issue
Block a user