From 04d283ecda196e8b208f983480f6d981554ae535 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sat, 18 Aug 2018 20:32:12 +0200
Subject: [PATCH] molden: patch to deactivate extension installer script

---
 .../science/chemistry/molden/default.nix      |  2 ++
 .../molden/dont_register_file_types.patch     | 29 +++++++++++++++++++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/applications/science/chemistry/molden/dont_register_file_types.patch

diff --git a/pkgs/applications/science/chemistry/molden/default.nix b/pkgs/applications/science/chemistry/molden/default.nix
index 3880b69fa19..76a19d410ef 100644
--- a/pkgs/applications/science/chemistry/molden/default.nix
+++ b/pkgs/applications/science/chemistry/molden/default.nix
@@ -12,6 +12,8 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ which ];
   buildInputs = [ gfortran libGLU xorg.libX11 xorg.libXmu ];
 
+  patches = [ ./dont_register_file_types.patch ];
+
   postPatch = ''
      substituteInPlace ./makefile --replace '-L/usr/X11R6/lib'  "" \
                                   --replace '-I/usr/X11R6/include' "" \
diff --git a/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch b/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch
new file mode 100644
index 00000000000..75ce593ed29
--- /dev/null
+++ b/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch
@@ -0,0 +1,29 @@
+diff --git a/makefile b/makefile
+index 58a9e74..64615b6 100644
+--- a/makefile
++++ b/makefile
+@@ -32,8 +32,6 @@ os :=
+ ifeq ($(uname), Linux)
+  os := $(shell head -n 1 /etc/issue | cut -d" " -f1)
+  ifeq ($(os), Ubuntu)
+-    EXTEN = exten
+-    EXTENZ = exten2
+     LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lX11 -lm
+  endif
+  ifeq ($(os), Debian)
+@@ -278,7 +276,7 @@ LIBSOGL = -lglut -lGLU -lGL -lXmu -lX11 -lm
+ #
+ #LIBSG = -L/usr/X11R6/lib -Wl,-framework -Wl,GLUT -Wl,-framework -Wl,OpenGL -Wl,-framework -Wl,Cocoa -lGLU -lGL -lXmu -lX11 -lm
+ 
+-all:	molden gmolden ambfor/ambfor ambfor/ambmd surf/surf $(EXTEN)
++all:	molden gmolden ambfor/ambfor ambfor/ambmd surf/surf
+ xwin.o:	xwin.c rots.h
+ xwingl.o:	xwin.c rots.h
+ 
+@@ -344,5 +342,5 @@ exten:
+ exten2:
+ 	./register_extension.sh /usr/local/bin
+ 
+-install:	$(EXTENZ)
++install:
+ 	sudo install -t /usr/local/bin -m 755 molden gmolden ambfor/ambfor ambfor/ambmd surf/surf