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Biology package

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svn path=/nixpkgs/trunk/; revision=12953
This commit is contained in:
Pjotr Prins 2008-10-05 09:00:19 +00:00
parent cb546965bc
commit 034f28e268
1 changed files with 29 additions and 0 deletions
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pkgs/applications/science/biology/slr/default.nix Normal file
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{stdenv, fetchurl, liblapack}:
stdenv.mkDerivation {
name = "slr";
src = fetchurl {
url = http://www.ebi.ac.uk/goldman-srv/SLR/download/current/slr_source.tgz;
sha256 = "0i81fv201p187mim4zakipxnhzqdvd3p5a9qa59xznc6458r2zsn";
};
buildInputs = [ liblapack ];
buildPhase = ''
cd src
ls
make -fMakefile.linux
'';
installPhase = ''
ensureDir $out/bin
cp -v ../Slr $out/bin
'';
meta = {
description = "Phylogenetic Analysis by Maximum Likelihood (PAML)";
longDescription = ''
SLR is a program to detect sites in coding DNA that are unusually conserved and/or unusually variable (that is, evolving under purify or positive selection) by analysing the pattern of changes for an alignment of sequences on an evolutionary tree.
'';
license = "GPL3";
homepage = http://www.ebi.ac.uk/goldman/SLR/;
};
}