40 lines
1.1 KiB
Nix
40 lines
1.1 KiB
Nix
|
{ lib, fetchFromGitHub, buildPythonPackage, isPy27, numpy, cython, zlib, six
|
||
|
|
, python-lzo, nose }:
|
||
|
|
|
||
|
|
buildPythonPackage rec {
|
||
|
|
pname = "bx-python";
|
||
|
|
version = "0.8.6";
|
||
|
|
disabled = isPy27;
|
||
|
|
|
||
|
|
src = fetchFromGitHub {
|
||
|
|
owner = "bxlab";
|
||
|
|
repo = "bx-python";
|
||
|
|
rev = "v${version}";
|
||
|
|
sha256 = "1i40vmn8n83vqcpqj843riv9vp16s753jc4wc90p0cmrnhmzcv13";
|
||
|
|
};
|
||
|
|
|
||
|
|
nativeBuildInputs = [ cython ];
|
||
|
|
buildInputs = [ zlib ];
|
||
|
|
propagatedBuildInputs = [ numpy six python-lzo ];
|
||
|
|
checkInputs = [ nose ];
|
||
|
|
|
||
|
|
postInstall = ''
|
||
|
|
cp -r scripts/* $out/bin
|
||
|
|
|
||
|
|
# This is a small hack; the test suit uses the scripts which need to
|
||
|
|
# be patched. Linking the patched scripts in $out back to the
|
||
|
|
# working directory allows the tests to run
|
||
|
|
rm -rf scripts
|
||
|
|
ln -s $out/bin scripts
|
||
|
|
'';
|
||
|
|
|
||
|
|
meta = with lib; {
|
||
|
|
homepage = "https://github.com/bxlab/bx-python";
|
||
|
|
description =
|
||
|
|
"Tools for manipulating biological data, particularly multiple sequence alignments";
|
||
|
|
license = licenses.mit;
|
||
|
|
maintainers = [ maintainers.jbedo ];
|
||
|
|
platforms = [ "x86_64-linux" ];
|
||
|
|
};
|
||
|
|
}
|